Ashore Commands
- Commander THIRD Fleet
- Naval Health Research Center
- Commanding Officer Mobile Mine Assembly Group (COMOMAG)
CDO (619)862-8097, SDO_Duty_Personnel@nmci-isf.COM - Fleet Anti-Submarine Warfare Training Center
- Center for Information Warfare Training Command San Diego (IWTC San Diego)
- Naval Consolidated Brig (MCAS Miramar)
- Naval Facilities Southwest (Taylor Street)
- Old Town Complex (OTC - SPAWAR)
- SPAWAR Systems Center (SSC) Topside
- SPAWAR Systems Center (SSC) Seaside
Afloat Commands
- USS Pasadena (SSN 752)
- USS Scranton (SSN 756)
- USS Alexandria (SSN 757)
- USS Hampton (SSN 767)
- USS Annapolis (SSN 760)
